Name: Virlab
Type: Organization
Bio: Research Group of HIV Studies, Department of Microbiology, Faculty of Medicine, University of Tartu
Location: Biomedicum, Ravila 19, Tartu, 50411 Estonia
Blog: https://www.biomeditsiin.ut.ee/en/institute/department-microbiology
ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
blast-virome
Virome taxonomic profiling using BLAST
cdhit
Automatically exported from code.google.com/p/cdhit
contigs
dadasnake
Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake
demovir
Taxonomic classification of viruses at Order and Family level
discover-profile
Snakemake HPC cluster profile for discover-virome workflow
discover-virome
discover-virome: identify and quantify viruses from metagenomic assemblies
dmp
Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.1101/2020.11.27.401125v1 and full data can be requested from EGA (https://ega-archive.org/studies/EGAS00001005027) and Lifelines biobank (https://www.lifelines.nl/researcher)
emg-viral-pipeline
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
ena-upload
Snakemake workflow to upload Sars-Cov-2 reads to ENA
ena-upload-cli
galaxy-api-scripts
Ad hoc scripts to run ARTIC COVID19 Galaxy workflows
generic
install_aspera_connect
Install latest version of Aspera Connect and show example how to use it for downloading sequening data.
mapto
Map reads to random stuff using bowtie2
megahit
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
meta3c-workflow
meta3c data analysis Snakemake workflow
metabat-singularity
MetaBat metagenome binning tool singularity image
metagenomics-workshop
metator
Metagenomic binning based on Hi-C data
metformin-virome
minced
Mining CRISPRs in Environmental Datasets
p-dip
Pathogen discovery pipeline (p-dip)
phageterm
Phageterm fork of the code that is available via sourceforge
prjna399742
PRJNA399742 virome analysis samples list and config files
prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
quantify-virome
quantify-virome: identify and quantify viruses from metagenomic shotgun sequences
quast-singularity
QUAST singularity image
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
