hjmh Goto Github PK

beeimaging

Python notebooks for analyzing ca-imaging data collected in honey bees

flecht

cellular automata in python

fly2p

utility functions for analyzing (fly) calcium imaging data

flybowl

Analysis code for tracking data from 'fly bowl' assay (used for walking fly CX output screen)

flyfreewalking

Analysis code for tracking data from free walking flies

flynotebooks

flyover094_arduino_bcsbox

Arduino sketch and libraries for interfacing hardware and FlyOver using the Janelia Behavioural Control System (BCS) box.

flyover102_arduinomega

Arduino sketch and libraries for interfacing hardware and FlyOver using an Arduino mega microcontroller

flyvr

Analysis code for visual navigation experiments with FlyOver virtual reality for fruit flies

forty-jekyll-theme

A Jekyll version of the "Forty" theme by HTML5 UP.

hjmh.github.io

Personal website

optogeneticswalkingarena

personalwebsite

plottingutilities

Functions related to visualisations for various fly assays

roipoly.py

Select a polygonal region of interest (ROI) with python and matplotlib, similar to the roipoly.m function from MATLAB.

trajectoryanalysis

Functions related to visualisations for various fly assays

unityscripts

collection of c# scripts for unity-based virtual reality

unityvr

Tools for analyzing data collected with a custom unity-based VR for insects.

vrstim

Generation and analysis of visual stimuli used in fly virtual reality