hjsbio Goto Github PK
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hjsbio's Projects
fakir
An R package for detecting and interpreting Intron Retention (IR) events
genomics_general
General tools for genomic analyses.
interest
IntEREst: Intron Exon Retention Estimator
intron-retention-scripts
Scripts for intron retention analysis from RNA-Seq data
intron_retention_analysis_senescence
Intron retention analysis for RNA-seq of cellular senescence models
intronexon_junction_splice_ratio
Code and associated annotation file to count the ratio of spliced an unspliced reads for all intron-containing genes.
irfinder
Detecting intron retention from RNA-Seq experiments
irsim
IRSim: RNA-Seq Simulator for Intron Retention in Coding RNA
polster
Pol II density estimated by statistical inference of transcription elongation rates by total RNA-seq
pugz
Truly parallel gzip decompression
python-100-days
Python - 100天从新手到大师
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
sam2irs
sam2irs is a program for calculating intron retention scores (IRS') using input in the sequence alignment/map (SAM) format.
scrna.seq.course
Analysis of single cell RNA-seq data course
squid
Stringent Quantitation of Unspliced Intron by Deep-sequencing
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