Name: HKUCS Bioinformatics Algorithms and Core Technology Research Laboratory
Type: Organization
Bio: Research group led by Ruibang Luo in Computer Science, The University of Hong Kong
Twitter: aquaskyline
Location: Hong Kong
Blog: http://www.bio8.cs.hku.hk/
HKUCS Bioinformatics Algorithms and Core Technology Research Laboratory's Projects
CellContrast: Reconstructing Spatial Relationships in Single-Cell RNA Sequencing Data via Deep Contrastive Learning
Chromatin Fiber Imaging
A framework for crossing-overlap chromosome segmentation
Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
variant calling using with sequencing data from multiple platforms
de novo variant calling in trio using Nanopore long-reads
Clair3-RNA - a long-read small variant caller for RNA sequencing data
Clair3-Trio: variant calling in trio using Nanopore long-reads
ClairS - a deep-learning method for long-read somatic small variant calling
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
Pytorch version of Clairvoyante
ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data
CONNET: Accurate Genome Consensus in Assembling Nanopore Sequencing Data via Deep Learning
Building a Chinese pan-genome of 486 individuals
A target captured medical exome ONT sequencing with amplicon variant calling workflow
Governome - Towards a new standard in genomic data privacy: a realization of owner-governance
A web platform for hosting up-to-date MEGAHIT assemblies of publicly available but challenging metagenome sequence data.
HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs
MegaPath: sensitive and rapid pathogen detection using metagenomic NGS data; MegaPath-Amplicon: filtering module for metagenomic amplicon data
MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics; MegaPath-Nano-Amplicon: filtering module for metagenomic amplicon data
Mirtronstructdb: A comprehensive database of mirtrons with predicted secondary structures
Comprehensive pipeline for detection of TB from ONT adaptive sequencing and amplicon data.
A tool to detect structural variant
A tool to detect full length isoforms of RNA
Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long reads