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Hakan Kucukdereli's Projects

avoid icon avoid

Arduino sketch for active avoidance paradigm. Easy integration with Andermann lab core behavior rigs.

calblitz icon calblitz

Blazing fast calcium imaging analysis toolbox

clearmap icon clearmap

ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.

code icon code

pyPhotometry code, GUI and micropython firmware

cv icon cv

My automatically-generated academic CV

deeplabcut icon deeplabcut

Markerless tracking of user-defined features with deep learning

deepslice icon deepslice

A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.

digitalwritefast icon digitalwritefast

Arduino library for faster digitalWrite using port manipulation and macro for ease in pin assignments.

flir-thermal icon flir-thermal

Python wrappers to read seq files from flir thermal cameras. These functions require FLIR sciene file SDK.

m-track icon m-track

M-Track: A new software for automated detection of forepaw trajectories in mice

virmen icon virmen

This is a fork of ViRMEn by Dmitriy Aronov from David Tank lab at Princeton. This repo is only for Andermann lab implementation of ViRMEn. For the original code and documentation visit https://pni.princeton.edu/pni-software-tools/virmen

virtually icon virtually

Code to analyze VR RTPP behavior. This code has been kicking around for some time now. Written and optimized for a very specific purpose in mind. Use it at your own peril.

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