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causal-network-embeddings

Software and pre-processed data for "Using Embeddings to Correct for Unobserved Confounding in Networks"

causalgraphs_latex

Drawing graphical models for causal inference using LaTeX

class_imbalance

Jupyter Notebook presentation for class imbalance in binary classification

cleanehr

Essential tools and utility functions to facilitate the data processing pipeline, data cleaning and data analysing of clinical data from CC-HIC

co-authorship-network

Co-Authorship Network of 402.39K authors on Google Scholar

commondatamodel

Definition and DDLs for the OMOP Common Data Model (CDM)

diagnosis-codes

Information on diagnosis code lists used in MHRN, including formats and datasets

ds4stats

Data science for statisticians workshop

etl---korean-nsc

ETL code for converting Korean National Sample Cohort (NSC) derived from national insurance health service into OMOP-CDM v5 developed by Ajou University

gwa_tutorial

A comprehensive tutorial about GWAS and PRS

healthknowledgegraph

i2b2-quickstart

Quick automated installation of i2b2 in VMs, Amazon-Web-Service and Docker

ldsc

LD Score Regression (LDSC)

machine-learning-projects

Machine Learning Experiments and Work

markdown-cv

a simple template to write your CV in a readable markdown file and use CSS to publish/print it.

markdown-cv-1

Simple Markdown CV / Resume

markdown-resume

Generate a responsive CSS3 and HTML5 resume with Markdown, with optional PDF output.

mhrn-central

Public Resources from the Mental Health Research Network

mhrn-predicting-suicide-supplement

ndc_map

Mapping U.S. FDA National Drug Codes (NDC) to Drug Classes and Codes

ohdsi-in-a-box

Virtual Machine containing SynPUF data in OMOP CDM, a RDBS including query client, WebAPI, ATLAS, R and Python.

omop-standardized-vocabularies

pgx-samples

Applications using Parallel Graph AnalytiX (PGX) from Oracle Labs

phenolines

Research prototype to visualize the temporal evolution of phenotypes in diseases described by topic models, based on the Human Phenotype Ontology

phesant

PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank

project-summaries

A place to find participating sites, tracking of IRB approvals, IRB approval dates, DUA/DTA status, and IRB approved study specifications

prscs

Polygenic prediction via continuous shrinkage priors

prsice

A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores

resume_template

Resume template in R/RMarkdown LaTeX offering style(Friggeri)-content(yaml) separation

shap

A game theoretic approach to explain the output of any machine learning model.