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hoelzer-lab's Projects

evaluation icon evaluation

A snakemake de novo transcriptome assembly evaluation.

hypro icon hypro

Extend hypothetical prokka protein annotations using additional homology searches against larger databases

pcago icon pcago

PCAGO is an interactive web service that allows analysis of RNA-Seq read count data with principal component analysis (PCA) and agglomerative clustering. The tool also includes features like read count normalization, filtering read counts by gene annotation and various visualization options.

pocp icon pocp

Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014

president icon president

PaiRwisE Sequence IDENtiTy. Calculate pairwise nucleotide identity with respect to a reference sequence.

ribap icon ribap

A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs

rnaflow icon rnaflow

A simple RNA-Seq differential gene expression pipeline using Nextflow

treat icon treat

A nextflow pipeline for the evaluation de novo transcriptome assemblies: TranscRiptome EvaluATion (TREAT).

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