hoohm Goto Github PK

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

beer_its_analysis

BeerDeCoded first results using ITS

bio_practical

Tutorial script for practical course.

brb-seqtools

Suite of tools for processing BRB-seq data

cd8_acute_chronic

cellrouter

Reconstruction of complex single-cell trajectories using CellRouter

circles-sines-signals

A Compact Primer on Digital Signal Processing

cite-seq-count

A tool that allows to get UMI counts from a single cell protein assay

citeseqpipe

Pipeline for CITE seq data

clasp-action

This action uses clasp to push or deploy to Google Apps Script.

cryptotaxsweden

Script for generating a tax report for cryptocurrency trading which can be sent to the Swedish tax authorities.

dropseqpipe

A SingleCell RNASeq pre-processing snakemake workflow

ethodemos

hoohm.github.io

Build a Jekyll blog in minutes, without touching the command line.

ideal_docker

Docker repo for the Ideal project https://github.com/federicomarini/ideal/

materials

Devoxx4Kids Workshop Materials

pandoc_resume

Paul Fenwick's Resume

pcaexplorer

pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data

polars

Fast multi-threaded, hybrid-out-of-core query engine focussing on DataFrame front-ends

pvqtools

pyhomevm

pyHomeVM is a video manager for homemade movies. It allows you to store and watch your holiday movies easily

pyseqan

Python interface to some of the SeqAn sequence analysis library functionality

rts-forum-diarization

rust-htslib

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

scg_lib_structs

Collections of library structure and sequence of popular single cell genomic methods

sclvm

scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources of variation.

scngs-test-data

A workflow for creating small NGS test data sets, useful for continuous integration.

seurat

R toolkit for single cell genomics

shiny

shinyforms

📝 Easily create questionnaire-type forms with Shiny