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assembly

Streaming assembly for MinION data

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

bcst

Automatically exported from code.google.com/p/bcst

blog-post

cloudbrush

A De Novo Next Generation Genomic Sequence Assembler Based on String Graph and MapReduce Cloud Computing Framework

cobratoolbox

COnstraints Based Reconstruction and Analysis toolbox for MATLAB

constellations

contrail

extended-illuminus

Automatically exported from code.google.com/p/extended-illuminus

fieldbioinformatics

The ARTIC field bioinformatics pipeline

freecell-aai

Automatically exported from code.google.com/p/freecell-aai

gengraph

A repository for the GenGraph toolkit for the creation and manipulation of graph genomes

genomegraph

Somethings for genome graph in AMR profiling

japsa

Just Another JAva Package for Statistical Sequence Analysis

ksw2

Global alignment and alignment extension

metagenomic

metagenomic assembler with long reads

msa-noise-reduction

Automatically exported from code.google.com/p/msa-noise-reduction

msa2vcf

npanalysis

Software for Nanopore Analysis

npbarcode

Demultiplex the Nanopore barcoding data

npgraph-manuscript

npgraph-presentation

npreader

Read nanopore sequence reads in real-time

npscarf

oneliners

Useful bash one-liners for bioinformatics.

pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

ray

Ray -- Parallel genome assemblies for parallel DNA sequencing

rt-errors-prediction

Automatically exported from code.google.com/p/rt-errors-prediction

rt-ranking

Automatically exported from code.google.com/p/rt-ranking

ru

Read Until scripts