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bamdst

a lightweight bam file depth statistical tool

bcfr

Bin-map Constructer For RILs

biocode

Bioinformatics code libraries and scripts

bwa-mem2

The next version of bwa-mem (WIP; not recommended for production uses at the moment)

dxy

Caculate the genetic distance of Dxy(like Fst) between the two populations form the vcf file .

genomics

Scripts, utilities and programs for genomic bioinformatics.

getorganelle

Get organelle genomes from genome skimming data

idep

Integrated Differential Expression and Pathway analysis

mitoz

MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes

mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

ngs-analysis

二代测序数据分析

ngs-tools

python program for bioinformatics

novoplasty

NOVOPlasty - The organelle assembler and heteroplasmy caller

one-python-craftsman

"One Python Craftsman" is a collection of articles on how to write better python codes.

python

All Algorithms implemented in Python

python-scripts

because i'm tired of gists

qtlseqr

QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis

ratite-genomics

Scripts and other material for the assembly and analysis of ratite genomes.

snakemake-workflows

An experimental repo for common snakemake rules and workflows

snpbinner

SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.

soapgaea

soapnuke2

a fast fastq files process tool