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angsd

Program for analysing NGS data.

bamdeal

BamDeal: a comprehensive toolkit for bam manipulation

bioinformatics

self bioinformatics source code

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

de_novo_scripts

Script used to identify de novo variants from sequencing data.

denovosim

Simulate de novo mutations using model based on trinucleotide mutation rate model introduced in Samocha et. al, 2014. Users can condition on number of patients in a study, and number of mutations observed. Updates to the model planned and tracked in issues section.

fly_us

美国大学备考资料 How to apply US colleges

fraction-under-selection

Python function for estimating the fraction of sites under purifying selection or positive selection

fxtools

FxTools: a comprehensive toolkit for FASTA and FASTQ file manipulation

gene-lookup

Gene Lookup for denovo mutations in a set of studies.

gene_lists

List of gene lists for genomic analyses.

genicintolerance

Genic intolerance to functional variation and the interpretation of personal genomes.

gwas-catalog

Extracting disease-gene associations from the GWAS Catalog

intellij-idea-tutorial

IntelliJ IDEA 简体中文专题教程

leehom

Bayesian reconstruction of ancient DNA fragments

minimal_representation

Convert genetic variants to minimal representation

mitoz

MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes

multiple-mutations

pmdtools

Compute postmortem damage patterns and decontaminate ancient genomes

soaptyping

HLA typing for Sanger Based Test

tdt

Transmission Disequilibrium Testing

trio_sequence_analysis