Comments (7)
Expanding on the list a bit before I add it into the documentation
- netcdf4 (tested on 4.7 and 4.8)
- requires parallel installation
- hdf5 required
- mpi (openmpi or intel mpi, not mpich)
- compilers: either gcc or icpc (intel compiler)
- intended to be compiled with c++14 standard (this is specified in the compiler flags in the
system.mk
file)
- intended to be compiled with c++14 standard (this is specified in the compiler flags in the
Not required for FlowSieve, but required for the Tutorials (specified in Tutorials/environment.yml
). May not require these specific version, but tested with these versions.
- python=3.7
- numpy=1.17
- matplotlib=3.1
- netCDF4=1.4
- scipy=1.3
- pip
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Seems like I have those... will update if I discover something on my end once #24 is fixed.
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Seems like
- curl
- hdf5-mpi (not just hdf5)
is also required to compile. Here is the Nix file I used to compile
❯ cat default.nix
# Use `nix-shell --pure` to verify if the listed dependencies are sufficient or not
{ pkgs ? import <nixpkgs> {} }:
let
shell = pkgs.mkShell {
name = "flowsieve-nix-dev";
packages = [
pkgs.mpi
pkgs.pkg-config
pkgs.netcdf-mpi
pkgs.hdf5-mpi
pkgs.gcc9
pkgs.curl
];
# cp -f ${builtins.getEnv "PWD"}/Systems/Graham.mk system.mk
shellHook = ''
make clean
OMPI_CXX=$(command -v g++) make -j Case_Files/coarse_grain.x
'';
};
in shell
from flowsieve.
I've added a section to the Install
documentation outlining these library requirement. Thanks for the suggestion!
I'm not familiar with Nix (or other library image tools), but I'll look into them a bit. I tend to shy away from compiling libraries mostly because it seems daunting, but the improved portability would be nice.
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I dont expect you to use Nix, I simply shared it for future reference. It fetches precompiled builds of libraries.and gives an isolated shell. It was handy for me to track down dependencies.
from flowsieve.
That's great, thanks!
from flowsieve.
I see that it updated in https://flowsieve.readthedocs.io/en/latest/install1.html, so this issue can be closed.
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Related Issues (20)
- When does filter commute with derivatives? HOT 5
- Scalar Tutorial HOT 4
- Makefile for Jasmin HOT 14
- question about irregular longitude and latitude, and many times HOT 4
- Cannot find -lhdf5 HOT 9
- Installation errors with gcc 10 HOT 14
- Helmholtz decomposition in a high-resolution current HOT 2
- Add a copy of `constants.hpp` with the specific values in Tutorials HOT 3
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- Filering on cartesian grid HOT 2
- How to make an appropriate system.mk file HOT 2
- The range to which coarse-grain is performed locally HOT 8
- ''from matpy import FiniteDiff'' failed HOT 2
- Compilation error
- Successfull compile but 'Assertion `input_nc_format == (3)' failed.' on JASMIN HPC
- Errors, compute_KE_spectra_and_slopes.cpp:(.text+0x139a): undefined reference to functions, such as `potential_vel_from_F HOT 8
- About Parallelization HOT 1
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