Name: Yan Wong
Type: User
Company: Big Data Institute
Bio: Evolutionary biology, genetic genealogies, and science comms. Interested in fundamentals of biology. Deeply involved in @tskit-dev and @OneZoom projects.
Twitter: dryanwong
Location: Oxford, UK
Blog: https://www.bdi.ox.ac.uk/Team/yan-wong
Yan Wong's Projects
project management documents and discussions for tskit development
Variational dating of ancestral recombination graphs
Argentum
Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
cython + htslib == fast VCF and BCF processing
Drawing functions for Demes demographic models
Docker baseimage based on phusion/baseimage-docker
Docker container for Nginx
Draft repo for creating graph-like representations of succinct tree sequences, with user interaction
Encyclopedia of Life
A simple ecards script of the Encyclopaedia of Life
A single page that shows a set of 'best' Encyclopedia of Life thumbnails
Fast heuristic ARG construction
Forward-time simulation of the msprime data structure (for development)
Notebooks etc for templating analysis of the GEL inferred tree sequences
Fast random access of bzip2 files in Python
Build interactive, publication-quality documents from Jupyter Notebooks