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abiotrans

A Biostatistical tool for Transcriptomics Analysis

acl4ssr

SSR 去广告ACL规则/SS完整GFWList规则/Clash规则碎片，Telegram频道订阅地址

actions-openwrt-passwall

Actions使用Lienol-OpenWrt源码编译含passwall服务固件

awesome_spatial_omics

tools and notes for spatial omics

bioinf2019

bioinforbricklayer

Learning materials, files and codes for bioinformatics

bioinformatics

clams-pan-cancer

R code used for analysis and generating figures of article 'Pan-cancer application of a lung-adenocarcinoma-derived gene-expression-based prognostic predictor' from Nacer et al.

data_visualization_graphs

gdcrnatools

GDCRNATools - An R package for downloading, organizing, and integrative analyzing lncRNA, mRNA, and miRNA data in GDC

hcc_sc_2022

HCC single cell analysis for Alvarez, Benhammou et al.

index_model

Computational model to calculate tumor index (TI) using gene expression profile of samples

irls

Machine learning-based integrative analysis develops an immune-derived lncRNA signature for improving clinical outcomes in colorectal cancer

kirc

The project is aim to use Deep learning methods on Omics-data, including RNA-seq, copyNumber, methylation_450 and protein_RPPA to find prognostic biomarkers which contribute to improve the survival rate in Kidney renal clear cell carcinoma

lawson2020

lede

Lean's OpenWrt source

liquidbrain_scripts

This folder ultimately should contains all my project shown in my Youtube channel.

muc-m1

Comprehensive analysis highlighted and verified the robust predictive value of Macrophage M1 and its essential role in immunophenotype determination among patients with mUC.

mytcga

It's just a personal record for studying how to analysis TCGA data(expression+mutation+methylation+CNV)

normalizegenecounts

Takes raw counts and normalize to CPM, RPKM or TPM

openwrt-ci

OpenWrt CI 在线集成自动编译环境

pass-on-codes

phdthesis

analysis codes for PhD thesis

practicalbatch

Code for published paper "The Practical Effect of Batch on Genomic Prediction"

projectils_casestudies

A repository of case studies using ProjecTILs

rgcookbook

R Graphics Cookbook

ridge_lasso_elastic_net_demo

single-cell-best-practices

https://www.sc-best-practices.org

single-cell-papers-with-code

Papers with code for single cell related papers

tcga_example