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1click-hpc

Deploy your HPC Cluster on AWS in 20min. with just 1-Click.

aha

Ansi HTML Adapter

alignstats

Comprehensive alignment, whole-genome coverage, and capture coverage statistics.

ansi2html

Convert text with ansi color codes to HTML

anybar

OS X menubar status indicator

arioc

Arioc: GPU-accelerated DNA short-read alignment

as-tree

Print a list of paths as a tree of paths 🌳

atom-git-project-manager

Atom package that identifes all your git projects and provide quick project opening.

atom-rsync

Atom package to sync files bidirectionally between remote host and local over ssh+rsync

aws-parallelcluster

AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.

bamqc

Mapped QC analysis program

bashids

Pure Bash implementation of the hashid algorithm from http://hashids.org/

bashsimplecurses

A simple curses library made in bash to draw terminal interfaces

biograph

The BioGraph genomics analysis platform

biogui

bioGUI provides install modules for bioinformatic software for users and allows developers to script a GUI for their applications.

bioinformatics

Bioinformatics analysis scripts, workflows, general code examples

black

The uncompromising Python code formatter

breader

breader (Buffered File Reader), asynchronous parsing and pre-processing while reading file. Safe cancellation is also supported.

bwa-mem-scale

bwa-mem2

The next version of bwa-mem

ccat

Colorized cat command in Python. Uses Pygments to do automatic syntax highlighting.

chaostoolkit

Chaos Engineering Toolkit & Orchestration for Developers

cherrypy_examples

cherrypy recipes : google oauth2

colr

Easy terminal colors, with chainable methods.

complexheatmap

Make Complex Heatmaps

compter

An application to graphically summarise kmer enrichment in a set of sequences

covid-19-signal

Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.

cronicle

A simple, distributed task scheduler and runner with a web based UI.

cronicle-edge

Cronicle V2 (Orchestra) community prototype

cubi_demux

Demultiplexing utility, companion to flowcelltool.