Comments (3)
PR started:
icgc-argo-workflows/nextflow-data-processing-utility-tools#49
from argo-data-submission.
@lindaxiang has provided more feedback, but for now @edsu7 will merge what he has for now and address feedback later. Song/Score should be changed, @edsu7 to create separate ticket for this.
from argo-data-submission.
Actually incorrect settings were being passed into the client, which is what caused this issue, once settings were corrected, this no longer occurs, so PR has been merged, closing ticket
from argo-data-submission.
Related Issues (20)
- Update pyega3 to latest version and add `--connections` HOT 2
- 🐛 Sanity check failure HOT 3
- 🐛 `Decrypt-aspera` add renaming HOT 1
- On-fly Md5sum and filesize generation HOT 1
- Update seq-tools HOT 1
- loose the output file type restriction in tool sanityCheck
- Miss to catch the invalid value in schema validation HOT 1
- Add params `--force` to let the song-score-upload to overwrite the previously uploaded objects HOT 2
- Score parameters not being passed correctly HOT 1
- Update molecular metadata dictionary and template HOT 1
- Update data submission workflow to reflect the dictionary changes in `experiment` HOT 3
- Add check to verify existence of `matchedNormalSubmitterId` HOT 2
- Bump `validate-seqtools` HOT 1
- Add non-committal run HOT 1
- Force mandatory usage of profiles HOT 1
- Add step in sanity check to verify consistent studyID in params and experiment.tsv
- Print the validation report from `seq-tools` in the end
- Update the song/score URLs in configuration file for RDPC Prod/QA/Dev cutover to Cumulus HOT 2
- Update DEV and QA clinical url values HOT 1
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