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03mair-algoritmos-de-optimizacion

2020_ips_lung_differentiation

Reproducibility repo accompanying Chaido Ori, Meshal Ansari, Ilias Angelidis, Fabian J. Theis, Herbert B. Schiller and Micha Drukker "Single cell trajectory mapping of human pluripotent stem cells differentiating towards lung and hepatocyte progenitors".

2020_scworkshop

Code and data repository for the 2020 physalia course on single cell RNA sequencing.

adrenal

Code for adrenal paper

adv_scrnaseq_2020

Material for lectures and exercises of the SIB course "Advanced topics in single-cell transcriptomics" (May 2020)

awesome-deep-learning

A curated list of awesome Deep Learning tutorials, projects and communities.

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

codeclub

Repository for all things IHI CodeClub

complete-python-bootcamp

Lectures for Udemy - Complete Python Bootcamp Course

comunet

COMUNET: a tool to explore and visualize intercellular communication

cortex-study

data-science--cheat-sheet

Cheat Sheets

deeptools

Tools to process and analyze deep sequencing data.

drimpute

Imputing dropout events in single-cell RNA-sequencing data.

essential_math_for_ml

genomics-in-the-cloud

Source code and related materials for the O'Reilly book

gonad-study

holloway_czerwinski_tsai_2020

in-depth-ngs-data-analysis-course

Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.

ipython-quick-ref-sheets

This is ongoing work developing quick reference sheets for IPython

learning_vcf_file

Learning the Variant Call Format

myrepo

Testing setup

oneliners

Useful bash one-liners for bioinformatics.

probabilistic-programming-and-bayesian-methods-for-hackers

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

pwc

Papers with code. Sorted by stars. Updated weekly.

pythondatasciencehandbook

Python Data Science Handbook: full text in Jupyter Notebooks

schcl

scripts

All used scripts

scrna-seq