iferres Goto Github PK
Name: Ignacio Ferrés
Type: User
Bio: Bioinformatics.
Location: Montevideo - Uruguay
Ignacio Ferrés's Projects
ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
bactopia
A flexible pipeline for complete analysis of bacterial genomes
csi-nf
curso_metagenomica_iibce
Tutoriales para el curso de Metagenómica Funcional CABBIO
dcda
Domain Content Dissimilarity Analysis
download_map_assembly_nextflow
gti_uy_shiny
iferres.github.io
migenpipeline
mirecipe
mirecipe - microbial genomics pipeline
misc_r_functions
Some R functions / Wrappers / whatever
misp_test
mlstar
An easy way of MLSTyping your genomes in R.
nanoclust
NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
ncov19sop-artic
Nextflow pipeline for ARTIC-nCoV-bioinformaticsSOP-v1.0.0
ncov2019-artic-nf
A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
pagoo
A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.
pagoo_publication_scripts
Scripts supporting pagoo's publication
pangenome_benchmark
pangenome_simulation_figures
Repository for manuscript script and figures
pangenomeeval_scripts
pewit
Pangenome estimation.
pewit_publication_scripts
pewit_simulation_benchmark
pharokka
fast phage annotation program
phylen
Compute a phylogeny using EggNOG database
pirate
A toolbox for pangenome analysis and threshold evaluation.
prokaryota_vs_pfam
rblast
Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
rfunctions
Some R functions for microbial genomics analyses
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