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Name: Irwin Jungreis
Type: User
Company: MIT
Name: Irwin Jungreis
Type: User
Company: MIT
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
UCSC Genome Browser source tree. Stable branch: "beta".
This project contains python 2.7 software and data files for computing PhyloCSF-PsiEmp on Anopheles and Drosophila alignments. This is a comparative genomics method for determining whether a given multispecies genomic alignment is from a protein-coding genomic region.
The scripts in this git repository contain the main algorithms for computing PhyloCSF Candidate Coding Regions, as defined in "Discovery of protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci", by Jonathan M. Mudge, Irwin Jungreis, et al.
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