Comments (5)
@jjzieve the environment setup on the server that I'm using is extremely complex, a coworker of mine fixed the problem. Thanks for your help though
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I have this issue too, how did you solve this problem?
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@hhg7 Did you get this error: ImportError: No module named vcf.parser
or the gtc_to_vcf.py: error: argument --manifest-file is required
error?
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@jjzieve I got the ImportError
problem
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@hhg7 You followed the conda install recommendations? i.e. as outlined here: https://github.com/Illumina/GTCtoVCF#requirements
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Related Issues (20)
- GTC converter - WARNING - Reference is missing entry for chromosomes HOT 8
- Precision difference when updating numpy versions
- GTC parser error : All GT values in converted vcf are './.' HOT 4
- Illumina Generated Manifest has no RefStrand column HOT 5
- Replace ID in output VCF with `--id` option
- GQ type is "String" instead of "Float" HOT 1
- download_reference.sh is outdated HOT 3
- Unable to run download_reference.sh on Mac HOT 3
- Unclear Error message HOT 1
- Next release HOT 2
- download_reference script has broken links HOT 2
- Reference not detected if lowercase characters HOT 4
- Python3 Question HOT 3
- SourceSeq validation failures should be skipped instead of erroring out
- Bus error when converting GTC to VCF HOT 7
- GQ score clarification HOT 3
- VCF REF column outputting in bytes instead of string HOT 3
- Python3 support HOT 1
- ERROR - Reference is missing entry for chromosome 3 HOT 2
- Any experience about GQ settings HOT 1
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