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7t_pvs

Source code of "Automatic quantification of perivascular spaces in T2-weighted images at 7 T MRI", DOI: https://doi.org/10.1016/j.cccb.2022.100142

amico

Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data

apart-qsm

An iterative magnetic susceptibility sources separation method

app-cit168parc

A dockerized parcellation of human subcortical brain nuclei from the work of Pauli et al. 2018

app-segment-thalamic-nuclei

This app will segment the thalamus into its multiple components using the developer version of Freesurfer's segmentThalamicNuclei.sh function (http://freesurfer.net/fswiki/ThalamicNuclei). This app takes a Freesurfer segmentation in as an input and generates .mgz files with the appropriate thalamic segmentation inside the Freesurfer directory as an output.

app_impulsed_fitting

auto_acpc_reorient

Cross-platform automatic AC-PC realignment/reorientation and coregistration robust to brain damage in SPM

axsi

bc-gcn

Code for the paper "Brain Connectivity based Graph Convolutional Networks for Infant Age Prediction"

bnets

Code for measuring brain networks from structural and functional MRI data

bold_delay_repro

Analysis pipeline for "BOLD delay reproducibility" study

brainnet-ml-toolbox

Python Machine Learning Toolbox for Brain Network Classification. Source codes are included of the top 20 teams in the Kaggle competition.

chi-separation

Code for magnetic susceptibility source separation

combined-dwi-modeling-and-tumor-classification

MATLAB&python

conditional-similarity-networks

csg_dicoms_anonymizer

Robust and easy to use generic dicoms anonymizer with demographics csv spreadsheet anonymization by hashed ids

csg_mri_pipelines

MRI preprocessing and analysis pipelines and tools for the study of disorders of consciousness

despot1

T1 mapping based on variable flip angle acquisition scheme (VFA)

dicom-anon

Python DICOM Anonymizer

dsc-mri-toolbox

Dynamic Susceptibility Contrast MRI toolbox - AIF selection, deconvolution and leakage correction

dwi-utilities

Functionality for apparent diffusion coefficient (ADC) map and computed high b-value diffusion-weighted (DWI) magnetic resonance image (MRI) generation.

elikopy

ElikoPy is Python library aiming at easing the processing of diffusion imaging for microstructural analysis.

enhancement-of-perivascular-spaces-using-densely-connected-deep-convolutional-neural-network

fml_pmri

python ML code to estimate CBF, OEF, and CMRO2 from dc-fMRI DATA

frangivesselnesssegmentation

free-water-elimination-dti

Reproduce the artice Hoy et al. 2014 Optimization of a free water elimination two-compartment model for diffusion tensor imaging. Neuroimage 103:323-33. doi: 10.1016/j.neuroimage.2014.09.053

fs-select

FS-Select identifies the best feature selection (FS) method for a given dataset from a pool of FS methods.

funfusean

Structural Similarity based Anatomical and Functional Brain Imaging Fusion

fw-dti-beltrami

gbss

Gray-matter Based Spatial Statistics