Provide output as text files.

[imperialcollegelondon]

Provide output as text files.

[jarib]

@g-rutter I have a script here that generates a CSV per country from the model output: https://github.com/jarib/covid19model/blob/6e4a0e36e220333d43b8f6d75480b2e16cbb9240/make-country-csvs.r

@s-mishra Let me know if you'd like a pull request that drops this under web/ somewhere.

[g-rutter]

@s-mishra Thanks for your response. I am glad to hear that. I think the issue should remain open if your advice is "we are working on it" - that would be the usual approach.

@jarib Thanks for this. It should be helpful to the Imperial team.

[becare-rocket]

How long does it take to run? I'm running it now. Only took about 15 minutes to setup. What kind of machine are you using. I will benchmark mine when it finishes...

[becare-rocket]

Approximate benchmark is it takes about 40 minutes on an old mac-mini. I would bet it would run about 4x faster on a newer machine. I give this just so that other users running for the first time can have an idea on how much time it would take.

[becare-rocket]

G-Rutter -- I think the run takes about an 40 minutes on a macmini, although I am not sure I get the same results as they are presenting. To get the data in tabular form, find make-table.r and uncomment the commented lines that do a write.csv. You can change the target directory from "figures" to something else you prefer. I suggest setting up the batch job to run once around 1300Z so as to capture the current day's Euro CDC data. After that -- no need to resort to reading pixel's from a chart. If you are lucky you can get the Imperial College Team to do it for you, but it is not that hard. I wrote a small r function to translate their csv's back into the format that my R model expects transposing the rows and columns.

[s-mishra]

Hi @g-rutter sure we are working on it to provide csv or just a model that runs in like an hr or so. @becare-rocket that 40 min is the debug run not the full run.

[payoto]

Hello @jarib,
Lovely feature! It was on my todo list, I'm gonna pull it into my fork on branch https://github.com/payoto/covid19model/tree/community-contribs , if you don't mind.
I'm maintaining a branch of community features on my fork feel free to have a look for something of interest.

@s-mishra It would be nice to reopen this and tag it with the community label as we discussed the other day, similarly with PR #66 which seems related.