Related Issues (20)
- Provide term names for contextual enrichment terms
- Support cell set graph generation HOT 1
- Extend cell set graphs with (cell) ontology classification. from enrichment
- Add label settting function for co-annotation graph generation HOT 1
- Supported workflows HOT 1
- Add wrapper object that initialises and contains enricher and analyzer objects
- Contextual enrichment should restrict to cells HOT 1
- Stop rewriting Uberon IDs as CL IDs in RDF generation. HOT 2
- GraphGeneration.visualize_rdf_graph needs pydoc HOT 3
- Extend graph visualization to give more flexibility in filtering
- Set IRIs HOT 3
- Release on PyPi as beta HOT 1
- Add new enrichment method HOT 2
- Minor Bug Fixes and Improvements - Manual Testing Notes
- refactor to call transitive reduction method from pandasaurus
- Fix doc errors
- Investigate switching graph generation to use https://github.com/aws/graph-notebook
- Extend metadata pulled from CxG H5AD
- Record percentage contribution of cells defined by CxG standard obs fields on each cell set HOT 1
- RDF representation should include dataset object populated with properties from h5ad `uns`
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from pandasaurus_cxg.