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Ingo Achim Müller's Projects

bingo-tools icon bingo-tools

Tools and scripts used for various steps in a bioinformatics workflow

checksum_scilife icon checksum_scilife

A short script to check md5sums from SciLife deliveries which come with provided .md5 files

nf-hestu icon nf-hestu

A nextflow workflow to estimate heterozygosity through a genotype likelihood based approach as implemented in ANGSD

nf-polish icon nf-polish

A reproducible pipeline for polishing DNA reads, with a particular focus on sequence data from museum specimens

nf-umap icon nf-umap

Nextflow WGS mapping workflow to map historical specimen using bwa

nf_mito-mania icon nf_mito-mania

Nextflow pipeline that assembles mitochondria scaffolds using mitobim and checked scaffold by mapping reads to it using bwa mem and calls variants in freebayes for a consensus sequence.

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