Comments (1)
Hello,
it looks like the C binary hapog
was not in your PATH, which is not supposed to happen (and does not happen in my tests) in the case of a conda installation. I am suspecting that a problem occured when the package was updated. Could you please try to completely remove and reinstall Hapo-g? You can do it like this:
# Make sure to be in the base conda env
conda remove --all -n hapog
conda create -n hapog
conda activate hapog
conda install -c bioconda hapog
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Related Issues (20)
- Conda install fails HOT 3
- Polish before or after Redundans HOT 1
- ModuleNotFoundError HOT 1
- Error with --threads 1 HOT 1
- Minimum coverage for correction? HOT 2
- PackageNotFoundError HOT 4
- How do I get a vcf file? HOT 2
- hapog introduce non-codon character in the polished sequence HOT 13
- Question: how HAPO-G handles N in reads? HOT 4
- Question: how about polishing a phased diploid genome assembly? HOT 2
- Memory issue HOT 5
- Explanation of hapog.changes HOT 1
- TypeError issue HOT 12
- long and short reads HOT 1
- Does HAPO-G correct ambiguous bases in fasta
- Error with --threads 1 - persisting HOT 4
- Plant genome HOT 7
- High RAM consumption in plant genome HOT 10
- Phased assembly polishing
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