Comments (4)
Thanks for looking! The By Element/CPK color scheme is actually correct, and you can find a more exhaustive reference on Wikipedia.
It seems the PV documentation also mentions this page, under pv.color.uniform
which I assume is the default coloring.
https://pv.readthedocs.io/en/v1.8.1/coloring.html#available-color-operations
If you could take the table from Wikipedia, (just remove the third column, as having the color and the name of the gases should be enough) make it small and compact and perhaps put it at the bottom of the PV, it would make a great solution.
PS: Rachel said it would be very useful to also support coloring by secondary structure. I'll create a new issue for this with more information, so don't worry about this now.
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@bistaastha sure, that would really help!
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Hi @uosl , actually I couldn't find color significance on the pv docs page. Could you please have a look at this (https://www.rcsb.org/pages/help/3dview), the color scheme section if that helps.
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@uosl @akshatbhargava123 Hi! Can I work on this?
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Related Issues (14)
- [easy issue] Add preview.png to root of this repo. HOT 2
- Set default viewer mode correctly HOT 2
- Support more color operations HOT 2
- Consider using ngl instead of pv HOT 2
- Change protein selector to a dropdown HOT 6
- Make React components usable if installed via NPM HOT 1
- Improve error messages
- Use canonical protein's accession instead for PDB query
- Use alphafold instead of RCSB?
- For some genes it freezes in "fetching associated PDB ids"
- Add description about the protein and link to RCSB page
- Change visualization depending whether it is a Gene or a Protein page HOT 2
- Handle null response to PdbQuery HOT 1
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