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binary-nucleotide-encoding

A method for encoding FASTA files (or other Nucleotide raw data) into a more size efficient file

egap

Entheome Genome ONT/Illumina Assembly Pipeline

fundispipe

FunDiSPipe is a comprehensive bioinformatics pipeline designed for the Fungal Diversity Survey (FunDiS), specifically tailored for analyzing fungal ITS data from Oxford Nanopore Technologies sequencing.

ipsychonaut

Config files for my GitHub profile.

log_print

A simple text logger. Takes in a message and looks for color-tag words (PASS->green, NOTE->cyan, ERROR->red, DEFAULT->white) and then prints the message with Hour & Miniute tags to console appropriately colored and then logs the time and message to a generated run_log.txt file.

meta-tac-toe

Meta-Tac-Toe is an exciting twist on the classic game of Tic-Tac-Toe. The game board is a 3x3 grid, and each cell in this grid contains another 3x3 grid known as a "small board". The objective is to win the "meta-board" by securing three small boards in a row, either horizontally, vertically, or diagonally.

minion_qc_python

A Python refactoring of the R-Script MinIONQC

nucleotide-binary-tetrad-apng

An application of my Binary Tetrad Encoding to convert a given image, .fna FASTA file, and encode the chromomes into images and then create an animated .png (.apng) that cycles through the organism's chromosomes. The code also contains functions for decoding and quality control checks as well.

nucleotide-genome-comber

Filters out contigs that match a given database with local BLASTN

phylogenetic_pipeline

pokegeneproject

There exists traceable patterns in Pokemon breeding compatibilities, move-sets, and physical features; these attributes, in theory, represent the backbone of Pokemon evolution and allows us a deeper conversation around their biology. Utilizing multiple data sources, this project is intends to dive into the possible genetic structures of Pokemon evolution through analysis of compiled information, transcribed into RNA by pattern matching and having those sequences then aligned, mapped, and displayed as a phylogenetic tree

pynlptoolkit

A series of functions for parsing strange, but pertinent entries in a corpus (intended for Natural Language Programing)

qr-code-generator

A GUI for generating QR Codes with Embeded Images

report-generation-pipeline

HL-Public Repository

tlc_ml_capstone

Modeling an Optimal Classifier to iterate over Features of an unanalyzed Thin-Layer Chromatography Plate Image and generate a Mask of the Image Data Extraction. Cabrini University Master's in Data Science Capstone Project