Comments (2)
roblanf
commented on August 11, 2024
OK, we are shelving this until we know if a sensible default is to use modelrevelator or just GTR models for the merging.
Changing the parallelisation in MF2 is only smart if we end up wanting to calculate liklihoods for a lot of models for every partition.
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Thernn88
commented on August 11, 2024
It would also be smart to do the threading test AFTER ModelFinder is performed. Otherwise if you set threading to auto it will do the test, and pick some silly number like 3 threads which vastly slows down your model finder. Modeling scaled linearly with cores on tests I did with my 3990x.
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Related Issues (20)
- phylogenetic tree error
- small bug in .iqtree output HOT 1
- Version 2.2.0.7.mix binary HOT 1
- Bug on iqtree/LSD2 HOT 1
- coredump iqtree2.2.0.7
- Alisim problem with the Gamma distribution when using mixture models HOT 5
- Coredump with iqtree 2.2.0.5 when using ModelFinder HOT 1
- Does it make sense to convert SNP data to binary data?
- Potential consequence of reduce -ninit
- using -fconst
- Inconsistencies in constant site counts? HOT 1
- speed up the candidate tree set generation HOT 3
- Providing internal node names when simulating with option `--write-all` HOT 3
- -sup mapping of non-bootstrap values? HOT 2
- nan in test of symmetry HOT 2
- Testing constrained tree HOT 2
- Rootstrap_Inferring_rooted_trees_without_outgroup HOT 4
- ERROR: phylotreepars.cpp:63: void PhyloTree
- segfault on large analysis HOT 3
- weird example file default installation path HOT 1
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