Related Issues (20)
- Cmaple CLI args not appearing in help string
- Despite passing `--output-multifurcating-tree`, resulting tree is bifurcating, when run in cmaple mode HOT 1
- [Feature Request] Add support for the `--link-exchange-rates` option in the MAST model HOT 2
- Manual out of date with respect to `-t RANDOM`
- Web docs (and wiki) are different from cli help
- ERROR: ratefree.cpp:199: virtual void RateFree::initFromCatMinusOne(Checkpoint&, double): Assertion `fabs(sum_prop + getPInvar() - 1.0) < 0.01' failed. HOT 2
- CI fails for windows
- Why does cmaple cause two versions of iqtree to be available: iqtree and iqtree-aa?
- Error message could be more helpful when file not found
- Segmentation fault with large input matrix HOT 1
- IQ-TREE CRASHES WITH SIGNAL ABORTED: 'std::ios_base::failure' HOT 7
- IQ-TREE CRASHES WITH SIGNAL SEGMENTATION FAULT
- Inconsistent results from AU-test
- EX2 model inconsistent lnl btwn .sitelh and .log files when -blfix specified
- Feature Request: Add option to output nhx instead of iqtree specific newick
- `-MFP` fails with parition option `-q` HOT 1
- IQ-TREE multicore version 2.3.6 for Linux x86 64-bit issue with core usage when using -T AUTO and --threads-max combination
- ERROR: File not found AA HOT 2
- Concordance Analysis Bug - Large Number of Partitions? HOT 2
- Model selection time is ~20x slower on the Windows binary vs the Linux binary
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