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aind2-cnn

AIND Term 2 -- Lesson on Convolutional Neural Networks

artificial-intelligence

artificial-intelligence-for-trading

Content for Udacity's AI in Trading NanoDegree.

bamscale

BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.

bgi_vs_illumina_benchmark

This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA-sequencing" by Senabouth et al.

bigdatashad-2017-spring-csc

bioconda-recipes

Conda recipes for the bioconda channel.

bis-tools

A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clustering: alignWigToBed; )

bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

blog_posts

Blog posts for matatat.org

bwa-meth

align BS-Seq reads and extract methylation without intermediate temp files

caffo-coursera

A repository of my Coursera latex code and notes

chip-atlas

ChIP-Atlas web app source code and documentation. See wiki for details.

chipatlas

Source codes of ChIP-Atlas

chiptune

ChIPtune: chip-seq experiment similarity search

chromosomemappings

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

colorschemetool

combined-pvalues

combining p-values using modified stouffer-liptak for spatially correlated results (probes)

core

:house_with_garden: Open source home automation that puts local control and privacy first

cucumber

BDD that talks to domain experts first and code second

cucumber-rails

Rails Generators for Cucumber with localized steps for Capybara and Webrat

deep-learning

Repo for the Deep Learning Nanodegree Foundations program.

deep-learning-v2-pytorch

Projects and exercises for the latest Deep Learning ND program https://www.udacity.com/course/deep-learning-nanodegree--nd101

deep-reinforcement-learning

Repo for the Deep Reinforcement Learning Nanodegree program

dermatologist-ai

dji-log-parser

dna-me-pipeline

DCC/DAC methylation pipeline source

dnmtools

Tools for analyzing DNA methylation data

download-sra

edmr

Automatically exported from code.google.com/p/edmr