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chemo-stuff

deep-rules

Ten Simple Rules for Deep Learning in Biology

fextract_cool_signal_name

Example of plugin for LBFextract. This plugin extracts the number of reads per interval provided in a BED file.

fextract_jsd_to_flanking

lbfextract plugin to calculate the JSD divergence between the fragment length distribution in the flanking regions and at each position around the center of the transcription binding site

gan-in-chemoinformatics

gcparagon

commandline tool for fast computation and correction of GC biases in WGS DNA datasets from liquid biopsy samples taking the fragment length into account

kedro

A Python framework for creating reproducible, maintainable and modular data science code.

lbf

pyranges

Performant Pythonic GenomicRanges

pyrle

Numerical Run Length Encoding and Arithmetic in Cython

python-data-viz-workshop

A workshop on data visualization in Python with notebooks and exercises for following along.

workshop-uncool-mlops