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Repo for the manuscript on air shotgun metagenomic analysis with nanopore sequencing.
Genome annotation pipeline
Documents from a live coding session by Christopher Wolfram related to content from the 2016 film Arrival
A curated list of awesome stuff around the FAIR principles for (scientific) data, i.e that data is findable, accessable, interoperable and re-usable.
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
Dynamic, adaptive sampling during nanopore sequencing
GATK RNA-Seq Variant Calling in Nextflow
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Microbial co-occurrence network inferred from Earth Microbiome Project
Code repository of the Earth Microbiome Project.
This repository contains the supplementary material associated with my book: Essential Math for AI published by O'Reilly Media
(Meta-)genome screening for functional and natural product gene sequences
A dynamic database of fungal trait measurements
FUNGuild: parsing OTUs into functional guilds
Companion code repository for the "Genomics in the Azure Cloud" book
GPU-Jupyter: Leverage the flexibility of Jupyterlab through the power of your NVIDIA GPU to run your code from Tensorflow and Pytorch in collaborative notebooks on the GPU.
HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).
Detection models and Python scripts for automated insect monitoring with the Insect Detect DIY camera trap.
Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
Linking MAGs with 16S rRNA marker genes
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
A comprehensive pipeline for short read metagenomic data
Python package to study microbial communities using metabolic modeling.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.