Related Issues (20)
- Print command to header.
- Handle multiple motifs for same TF. HOT 1
- Allow iterative or parallel processing for ChIP-seq data. HOT 1
- control and documented runs HOT 2
- Other motif scanning/comparison tools.
- motifs.py bugs, tests & refactors HOT 3
- tf_expression.py bugs, tests & refactors
- thresholds.py bugs, tests, and refactors
- activity.py bugs, tests & refactors HOT 2
- get_motifs length all not individual TF HOT 2
- tf_expression: bed file format HOT 1
- variant code duplication HOT 2
- gene_expression.py bugs, tests & refactors
- motifs.py output order right investigation HOT 8
- 'join' used as method name in motif.py HOT 2
- TF name/gene symbol discordance HOT 1
- Many motif databases provide PFMs rather than count matrices
- summarize.py bugs, tests, & refactors
- Position of variant within motif.
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