j35p312 Goto Github PK

amycne

A copy number estimation toolkit

aneuploidyx

a repository used to simulate mosaic aneuploidies of chromosome X

aoc-bit

Collection of solutions for Advent of Code 2019

aoc2017

Advent of code 2017

aoc2019

aoc2020

aoc2021

array_db2vcf_db

script used for converting the clinical genetics array db to vcf file

assemblatron

De novo assembly variant validation tool

assemblytics

Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.

barcrawler

easy to use QC package for 10X genomics barcoded reads

bianca_singularity

Singularity env for analysis on the Bianca cluster

bionano_tools

Collection of tools for analysing bionano data

blobfish

Differential expression analysis using DEseq2 and Salmon

bootstrapann

A tool for computing ASE P values based on ASEReadCounter output files

caw

Cancer Analysis Workflow prototype

cg

Glue between Clinical Genomics apps

chicap

circuscircos

Scripts and singularity collection for running the Circos diagram tool

clevervulture

WiseCondorX container

clingenelists

Gene lists and some elementary tools for handling them.

clustered_cnv_supplementary

A bunch of scripts used for analysing clustered CNV

convert2vcf

a collection of scripts for converting various files into SV vcf

createtranslocations

A structural variant silumation pipeline based on WGsim,BWA, samtools and bamtools

cuda_singularity

Cuda drivers

cytosurevcffilter

a script for for filtering and cleaning FindSV output for visualisation using VCF2cytosure

esypesy

Script for generating esy file from starlims input

fastq_orienteering

ads a read pair tag to an interleaved fastq file

findsv

Structural variant pipeline

findsvsingularity

Singularity container for the FindSV pipeline