jackgisby Goto Github PK

covid-longitudinal-multi-omics

Repository for the paper: "Multi-omics identify LRRC15 as a COVID-19 severity predictor and persistent pro-thrombotic signals in convalescence" by Gisby and Norzawani et al. doi: https://doi.org/10.1101/2022.04.29.22274267

deepmet

A deep one class model for the identification of endogenous metabolites.

ica_omics_modelling

imid_rnaseq_processing

Pipeline for downloading and processing RNA-seq data

jackgisby

jackgisby.github.io

Site based on a Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

longitudinal_olink_proteomics

Repository for the paper: "Longitudinal proteomic profiling of dialysis patients with COVID-19 reveals markers of severity and predictors of death" by Gisby et al. doi: https://doi.org/10.7554/eLife.64827

metaboblend

Python package for de novo structural elucidation of small molecules in mass spectrometry-based Metabolomics

mini_projects

Miscellaneous mini projects, such as kaggle notebooks

mr-nextflow

MR for multiple exposures implemented using nextflow

packfinder

A package for the de novo discovery of pack-TYPE transposons

recode_rnaseq_pipeline

A parallelised pipeline for the analysis of RNA sequencing data. This repository is part of Imperial College London's ReCoDE project, which aims to support teaching and learning in research computing and data science.

reducedexperiment

Containers for dimensionally-reduced -omics data

rfmarkerdetector

subset_sum

Parallel implementation of subset sum in Python

tfl-bikes-data-pipeline

Processing TfL data for bike usage with Google Cloud Platform.