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abgdtree5

bayesianecosystems_iap

Notes and code for Bayesian ecosystem modeling IAP course

buildfasta

A script for parsing fasta files; given an original fasta, input file of headers by line breaks, and output file name

cdi

Clade Displacement Index

co2emissionpractice

This repo is to practice using GitHub with a CO2 emission data file

cyano_clock7

Molecular Clock output data analysis

disthgt

scripts to HGT within eggNOG homologous groups by identifying significant changes in distances between phyla

eggnogbyclass3

indexhgt

pipeline to identify and assess possible HGTs as molecular clock constrains in the tree of life

iris

A powerful, easy to use, and community-driven Python library for analysing and visualising meteorological and oceanographic data sets.

jupyter_notebooks

Jupyter Notebooks from L.T. Rangel, PhD.

mit-practes

Materials for MIT workshop "Practical Computing Tutorials for Earth Scientists"

mms_data_hunt

mwra-boston-logan-rainfall-data

A basic data analysis of Median monthly three day rainfall accumulation from Logan Airport NOAA data from the MWRA BHWQM dataset.

nitrilase

Nitrilase molecular clock node age analysis

notebooks

parsealn

planets

Software Carpentry Workshop practice

planets_practice202001

a practice repo for learning Git

scialog_sulfur

Code repository including scripts, data, figures and other files for Scialog Sulfur Assimilation gene history research project

sem_flood_risk_roadways_data_analysis

Data Analysis on Risk of Flooding, Erosion, and Climate Impacts (Sea Level Rise, Increased Rainfall Intensity) on Roadways in Boston, MA, USA.

splits-bipartition-table-function

For parsing bipartition table data from IQtree 2.x tree building output .splits.nex for analysis in excel

swirl_courses

A collection of interactive courses for the swirl R package.

tmp2

Test repo for PraCTES

treemmer

treemmer-animate

user-rule

A collection of code and scripts to reclaim your data.

vimeo-api-examples

Some examples of how to use our APIs.

zombi

Evolution simulator with extinct lineages