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awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

barcoderegression

bardensr

barcode demixing through nonnegative spatial regression

benchmarks-for-unpaired-measurement-integration-with-common-featurespaces

celerite2

Fast & scalable Gaussian Processes in one dimension

cluster-plus-latent

dagtests

Algorithms for testing hypotheses with nested structure

datasciencequestions

a collection of questions about data science, suitable for exams or quizzes

diffusion_paper

distributed

Distributed computation in Python

easy-algorithms

easy access to algorithms

easy-data

easy access to benchmark datasets

fireyfish

yet another pytorch implementation of poisson factorization

git_tutorial

A git tutorial for my Probabilistic Machine Learning reading group.

gse119450_d2stim

data for GSE119450 D2stim condition, with reprocessed sgRNAs

gse153056_anndata

ipyvizextras

Some random odds and ends to streamline visualization in ipython notebooks

leg-gps

logistic-svd

Python implementation of logistic svd

markov-link-method

Combining information between destructive measurement techniques

multiomics

Measure all the things

pg-binary-matrix-factorization

pleasing-matrix-order

Tiny package to reorder rows and columns of a positive matrix so that they appea

rabiesdendrites

scmageck

signedfac

GPU-based matrix factorization for normal, negative binomial, and bernoulli observations

silkfactorization

Scaleable Inference for Logistic Kalman filering

simplemocor

simple python package for rigid motion correction

structured-mlm

task-flow-flock