FileNotFoundError: [Errno 2] No such file or directory: 'data\\Clean\\Image\\LIDC-IDRI-0100\\LIDC-IDRI-0100\\0100_CN001_slice000.npy'

[jaeho3690]

FileNotFoundError: [Errno 2] No such file or directory: 'data\\Clean\\Image\\LIDC-IDRI-0100\\LIDC-IDRI-0100\\0100_CN001_slice000.npy'

[Narratorx]

This worked for me:

else:
print("Clean Dataset",pid)
patient_clean_dir_image = CLEAN_DIR_IMAGE
patient_clean_dir_mask = CLEAN_DIR_MASK
# Path(patient_clean_dir_image).mkdir(parents=True, exist_ok=True)
# Path(patient_clean_dir_mask).mkdir(parents=True, exist_ok=True)

#There are patients that don't have nodule at all. Meaning, its a clean dataset. We need to use this for validation
 for slice in range(vol.shape[2]):
     if slice >50:
         break
     lung_segmented_np_array = segment_lung(vol[:,:,slice])
     lung_segmented_np_array[lung_segmented_np_array==-0] =0
     lung_mask = np.zeros_like(lung_segmented_np_array)
     # CN= CleanNodule, CM = CleanMask
     # nodule_name = "{}/{}_CN001_slice{}".format(pid,pid[-4:],prefix[slice])
     # mask_name = "{}/{}_CM001_slice{}".format(pid,pid[-4:],prefix[slice])
     nodule_name = pid[-4:] + '_CN001_slice' + prefix[slice]
     mask_name = pid[-4:] + '_CM001_slice' + prefix[slice]
      meta_list = [pid[-4:],slice,prefix[slice],nodule_name,mask_name,0,False,True]

      self.save_meta(meta_list)
       np.save(str(patient_clean_dir_image) + '/' + nodule_name, lung_segmented_np_array)
       np.save(str(patient_clean_dir_mask) + '/' + mask_name, lung_mask)

[oqlaalrefai]

Can you help me?

[Dhruv-Singhh]

did you find any solution for this?

[Pollob001]

very good suggestion..its also worked for me...Thanks