Name: Md Abu Jaher Nayeem
Type: User
Company: Research Officer @icddr,b
Bio: A biologist who has passion for Bioinformatics, System Biology and Machine Learning
Twitter: JaherNayeem
Location: Dhaka, Bangladesh
Blog: [email protected]
Md Abu Jaher Nayeem's Projects
LaTeX Templates for Academic Writings
Material for the "Advanced topics in single-cell analysis" course (2022 edition)
Gut_Microbiome
tools and notes for spatial omics
it is the first course i have done in coursera.
Bulk RNA-seq & Differential Gene Expression Analysis Workshop Material
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
R package for analyzing single-cell data
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
Robs manual for the computational genomics and bioinformatics class.
CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
Linux, Jenkins, AWS, SRE, Prometheus, Docker, Python, Ansible, Git, Kubernetes, Terraform, OpenStack, SQL, NoSQL, Azure, GCP, DNS, Elastic, Network, Virtualization. DevOps Interview Questions
Oxford Nanopore's Basecaller
Using R language in microbiome analysis
EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
Publication-ready volcano plots with enhanced colouring and labeling
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
Make Picrust2 Output Analysis and Visualization Easier
A user-friendly workflow for phylogenomics
Command-line tools, commands, and code snippets for performing routine data processing and bioinformatics tasks.
Links to resources related to bioinformatics and data analysis.
Google Colab Tutorials for IBM3202
Config files for my GitHub profile.
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis