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  • šŸ‘‹ Hi, Iā€™m @jahernayeem. I'm a biologist & bioinformatician working in icddr,b.
  • šŸ‘€ Iā€™m interested in Bioinformatics, System Biology and Machine Learning
  • šŸŒ± Iā€™m currently learning Python, Nextflow and R
  • šŸ’¬ Ask me about - Bacterial genomes & Metagenomes, plasmids, software containers
  • šŸ’žļø Iā€™m looking to collaborate on Bioinformatics specially Genomics, Transcriptomics, Epigenomics, Metabolomics, Shotgut Metagenomics, Meta-transcriptomics and Proteomics data analysis.
  • šŸ“« How to reach me [email protected]
  • šŸ˜„ Pronouns - He/Him

Md Abu Jaher Nayeem's Projects

bulk_rnaseq icon bulk_rnaseq

Bulk RNA-seq & Differential Gene Expression Analysis Workshop Material

cellbender icon cellbender

CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

clinical-genomics icon clinical-genomics

Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline

cytospace icon cytospace

CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data

devops-exercises icon devops-exercises

Linux, Jenkins, AWS, SRE, Prometheus, Docker, Python, Ansible, Git, Kubernetes, Terraform, OpenStack, SQL, NoSQL, Azure, GCP, DNS, Elastic, Network, Virtualization. DevOps Interview Questions

ecotyper icon ecotyper

EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.

enhancedvolcano icon enhancedvolcano

Publication-ready volcano plots with enhanced colouring and labeling

gapseq icon gapseq

Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks

ggpicrust2 icon ggpicrust2

Make Picrust2 Output Analysis and Visualization Easier

gtotree icon gtotree

A user-friendly workflow for phylogenomics

helpful_commands icon helpful_commands

Command-line tools, commands, and code snippets for performing routine data processing and bioinformatics tasks.

helpful_links icon helpful_links

Links to resources related to bioinformatics and data analysis.

metawrap icon metawrap

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

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