James Krieger's Projects
WebGL accelerated JavaScript molecular graphics library
Image analysis software for cryo-electron microscopy
Official git repository for Biopython (originally converted from CVS)
Code and resources for the EPSRC BioSimSpace project.
MolSSI SARS-CoV-2 Biomolecular Simulation Data and Algorithm Store
Druggability Suite
The DSSP building software
Simple module to deal with EM tabular data (aka metadata)
All conda-forge feedstocks, in one convenient place
The OpenGL Extension Wrangler Library
The Integrative Modeling Platform
a Python module for calculating inertia tensors for collections of n-dimensional points
A tool to calculate the solvent accessible surface distance (SASD) between crosslinked residues.
A set of python scripts for carrying out the dimer interface analysis originally done in Sukumaran et al., EMBO J 2011
matplotlib: plotting with Python
MDAnalysis is a Python library to analyze molecular dynamics trajectories.
An open library for the analysis of molecular dynamics trajectories
The pure C++ implementation of the MMTF API, decoder and encoder.
Validating models using restraints from crosslinking mass spectrometry
A Python package for analyzing and visualizing molecular structures. For MSF bootcamp.
A Python implementation of the MRC2014 file format
Normal Mode Wizard
Takes in a pdb file and vibrational mode data from CHARMM and returns a nmd file for use with NormalModeWizard in VMD
The fundamental package for scientific computing with Python.
Node Version Manager - POSIX-compliant bash script to manage multiple active node.js versions