Comments (5)
The "neu3-body-cleave-dvid-output" branch now outputs in two ways: the old way (to an ad-hoc key-value instance) and the new way (using the DVID cleave API).
https://github.com/janelia-flyem/NeuTu/tree/neu3-body-cleave-dvid-output
There are not yet any nodes populated with the "labelmap" instance type that supports the new DVID cleave API, so this new code has not really been tested (except to verify that it displays a message when the operation fails).
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The "neu3-body-cleave-dvid-output" branch has been updated, and (simple) tests indicate that it works correctly with the new DVID cleave API:
https://github.com/janelia-flyem/NeuTu/tree/neu3-body-cleave-dvid-output
from neutu.
The "neu3-body-cleave-dvid-output" branch has been brought up to date with changes in "develop", and now also peforms check-out/check-in of the body being cleaved:
from neutu.
Merge of"neu3-body-cleave-dvid-output" into "develop" is pending:
#223
The cleaving tool's direct updating of the segmentation through the DVID API can be disabled as follows:
export NEU3_CLEAVE_UPDATE_SEGMENTATION=no
from neutu.
Now merged into "develop" and released in "z1".
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Related Issues (20)
- How to use skeletonize? HOT 3
- New body annotation item: hemilineage
- Current body not highlighted in grayscale during cleaving
- timestamps everywhere HOT 2
- Fetching supervoxel sizes after cleave takes a long time HOT 5
- Auto-seed all unassigned supervoxels
- neu3 can't handle large assignments HOT 1
- X coordinate change which moving mouse along Y axis HOT 1
- When navigating to a new location the grayscale changes zoom level
- cleave server should be configured from initial DVID server screen
- body ID overflow in neu3 protocol HOT 1
- Neutu can generate excessively long fetches
- to-do statuses HOT 4
- report last user to modify body in log box HOT 2
- support for Apple Silicon HOT 2
- Support for UUID:branch syntax HOT 8
- to do annotation issues
- .tif file does not render 2d Z-stack however will render 3d image of the 2d Z-stack. This is an arch linux install HOT 2
- Linux crash when selecting to do in ball cloud
- supervoxel splitting usually crashes in neu3 cleave protocol HOT 2
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