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aava-20-21-p2

Second Project of our Advanced Algorithms course, on the Common Substrings of More Than Two Strings problem

assembltrie

benchmarking_error_correction

This is the GitHub repository for our benchmarking study "Benchmarking of computational error-correction methods for next-generation sequencing".

bioconda-recipes

Conda recipes for the bioconda channel.

biotite

A comprehensive library for computational molecular biology

ccs

CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

colord

A versatile compressor of third generation sequencing reads.

complex-network

复杂网络研究资源整理和基础知识学习

cryfa

A secure encryption tool for genomic data

deduplication_errorcorrection

How error correction affects PCR deduplication: a survey based on UMI datasets of short reads

deep-learning-with-python-notebooks

Jupyter notebooks for the code samples of the book "Deep Learning with Python"

deep-learning-with-tensorflow-book

深度学习入门开源书，基于TensorFlow 2.0案例实战。Open source Deep Learning book, based on TensorFlow 2.0 framework.

deep-reinforcement-learning-algorithms-with-pytorch

PyTorch implementations of deep reinforcement learning algorithms and environments

deepbayes-2019

Practical assignments of the Deep|Bayes summer school 2019

deepconsensus

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

deepdirect

deeplearning-models

A collection of various deep learning architectures, models, and tips

dimig

Inferring disease-associated miRNAs

dpkl

Code accompanying the UAI 2021 paper 'Deep Kernels with Probabilistic Embeddings for Small-Data Learning'

essentialmath

fastdna

flnc

ggp-tf2

📈 Implementation of the Graph Gaussian Process using GPflow and TensorFlow 2

ginn

Graph Imputation Neural Network

harc

Fastq compression

heat

hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

hirgc

High-speed and high-ratio referential genome compression

jappy

Jappy Ping

jappy0

Personal repository