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ariane-et-le-monde

benchct

A qualitative evaluation tool which assess any pipeline results against a simulated dataset to obtain a clear understanding of its performance characteristics in answering a particular biological question.

cello

A string library

counttags

countTags is a c++ optimized software that counts occurrences of a set of k-mer signatures into a set of FASTQ (possibly gziped) files.

cractools-core

dokany

User mode file system library for windows with FUSE Wrapper

fontello

Iconic fonts scissors

jaudoux-beamer-theme

My personal Beamer theme (with Pandoc Interface)

jellyfish

A fast multi-threaded k-mer counter

jmol-bcd-project

kad

K-mer Abundance Database

kallisto

Near-optimal RNA-Seq quantification

kamix

Index and query k-mer matrices in BGZF

makepipe

A wrapper around Makefile to create beautiful pipelines with reusable bricks and simple YAML config file.

moby

Moby Project - a collaborative project for the container ecosystem to assemble container-based systems

nim-lapper

fast easy interval overlapping for nim-lang

simba-publication-pipeline

Pipeline used to generate SimBa publication results.

simct

A configurable generator of simulated RNA-Seq data that can emulate any specific biological mechanism and provide robust data sets covering cases such as fusion genes (or fusions).

slivar

variant expressions, annotation, and filtering for great good.

sole-search

Sole search fork

svtools

tami

Targeted mutation identification

vimrc

yaggo

Generate command line parser using getopt_long