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Javier Mendoza-Revilla's Projects

insilicomutagenesisfasta icon insilicomutagenesisfasta

Mutates every base of each DNA sequence in the input FASTA file and outputs a FASTA of all mutated sequences.

nucleotide-transformer icon nucleotide-transformer

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

selectioninlatinamericans icon selectioninlatinamericans

Scripts used to detect and classify signals of selection in Latin Americans used in Mendoza-Revilla Javier et al. 2022

vcf2fasta icon vcf2fasta

Given a VCF file and a reference FASTA file, returns two sequences for each variant, with the reference and variant (alternative) allele inserted into the sequence at the appropriate position.

vcf2sfs icon vcf2sfs

R functions for generating site frequency spectra (SFS) from a VCF file.

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