Javier Mendoza-Revilla's Projects
Mutates every base of each DNA sequence in the input FASTA file and outputs a FASTA of all mutated sequences.
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
Scripts used to detect and classify signals of selection in Latin Americans used in Mendoza-Revilla Javier et al. 2022
Given a VCF file and a reference FASTA file, returns two sequences for each variant, with the reference and variant (alternative) allele inserted into the sequence at the appropriate position.
R functions for generating site frequency spectra (SFS) from a VCF file.