jazzmanmike Goto Github PK

3dprintyourbrain

How to 3D print your brain from a T1 MRI image.

ants

Advanced Normalization Tools (ANTs)

ants_tumour_analysis

wrappers for using ANTs with tumour data

braintumor_3d

Code to make a brain with tumor for 3D printing

brats2013

Ah, yes, I see that you know your Judo well.

cca_tutorials

A series of Python based tutorials from CCA mainly on exploratory data analysis and machine learning

connectome_tractography

Matlab code for connectome analysis with tractography data

dbs

Python code for DBS analysis

dbsvatstats

Calculation of VAT summary and subregion statistics

fastfield

fieldtrip

The MATLAB toolbox for MEG, EEG and iEEG analysis

gmc

Radar plot analysis of GMC survey results

gpu_test

Test FSL GPU acceleration (bedpost, eddy, probtrackx)

instructions

Instructions on how to dockerize your algorithm and additional info, as applied in the BraTS challenge

leadfunctions

Some tools for using Lead-DBS in neurosurgery

logbook

A way to analyse your elogbook interactively as a matrix.

machinelearningbootcamp

boilerplate code, scripts, modules, data for CCA 2-day Machine Learning Bootcamp

machinelearningregression

boilerplate code, scripts, modules, data for Regression Analysis workshop

msn_dbs

Morphometric Similarity Network Code for Deep Brain Stimulation Data

pacer

PaCER - Precise and Convenient Electrode Reconstruction for Deep Brain Stimulation

python-intro

Materials for the "Introduction to Solving Biological Problems with Python" course

raincloudplots

Code and tutorials to visualise your data that is both beautiful *and* statistically valid

resting_fmri_analysis

tractography

Code for processing DTI data and performing tractography analyses

tumour_connectomes_matlab

scripts and functions for performing connectome analysis in matlab on tumour data

tumourconnectomeinr

A few R scripts & functions to get started and reproduce figures from BJN paper 2016

webapp