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Justin B. Kinney's Projects

07_ema_likelihood icon 07_ema_likelihood

Code for computational work reported in Kinney et al. (2007) PNAS 104(2):501-506.

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Data and inferred models from Kinney et. al., 2010, PNAS

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Code for "Rapid and Rapid and deterministic estimation of probability densities using scale-free field theories" arXiv:1312.6661 [physics.data-an]

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Code and processed data reported in Shi et al. (2015) Nat. Biotechnol. [in press]

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Code for "Unification of Field Theory and Maximum Entropy Methods for Learning Probability Densities" (2014) by Justin B. Kinney, available at http://arxiv.org/abs/1411.5371

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Processed data and analysis code for Sheu et al., 2015.

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Code for the Quantitative Biology course at CSHL, Fall 2016

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Processed data and analysis code for Adams et al., 2016 bioRxiv

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Analysis code for Hu et al., 2020

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Code for the 2018 QB Bootcamp in the Watson School for Biological Sciences

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Excercises for the 2018 URP programming workshop

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Code for Tareen & Kinney (MLCB 2019) https://doi.org/10.1101/835942

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Materials for the 2019 URP Programming and Data Analysis Course at Cold Spring Harbor Laboratory

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Exercises for the 2019 URP Python Programming and Data Analysis Course

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Repository for the 2020 QB Bootcamp, CSHL School of Biological Sciences

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Computational Scripts for Transcriptional Pausing

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Materials for the 2022 QB Bootcamp at Cold Spring Harbor Laboratory

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