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07_ema_likelihood

Code for computational work reported in Kinney et al. (2007) PNAS 104(2):501-506.

09_sortseq

Data and inferred models from Kinney et. al., 2010, PNAS

13_deft

Code for "Rapid and Rapid and deterministic estimation of probability densities using scale-free field theories" arXiv:1312.6661 [physics.data-an]

14_crispr

Code and processed data reported in Shi et al. (2015) Nat. Biotechnol. [in press]

14_maxent

Code for "Unification of Field Theory and Maximum Entropy Methods for Learning Probability Densities" (2014) by Justin B. Kinney, available at http://arxiv.org/abs/1411.5371

14_sheu

Processed data and analysis code for Sheu et al., 2015.

15_sordella

15_splicing

16_qbbootcamp

Material for the 2016 WSBS QB Bootcamp

16_qbcourse

Code for the Quantitative Biology course at CSHL, Fall 2016

16_titeseq

Processed data and analysis code for Adams et al., 2016 bioRxiv

17_ars

Analysis code for Hu et al., 2020

17_inducibility

Supplemental Code for Forcier et al., 2018

17_qbbootcamp

Exercises for the 2017 WSBS QB Bootcamp

17_urp

Code for 2017 CSHL URP program

18_expressionmanifolds

Data and analysis scripts for Forcier et al., 2018 (preprint)

18_qbbootcamp

Code for the 2018 QB Bootcamp in the Watson School for Biological Sciences

18_qbcourse

18_urp

Excercises for the 2018 URP programming workshop

19_mlcb

Code for Tareen & Kinney (MLCB 2019) https://doi.org/10.1101/835942

19_qbbootcamp

GitHub repository for the 2019 QB Bootcamp

19_urp

Materials for the 2019 URP Programming and Data Analysis Course at Cold Spring Harbor Laboratory

19_urp_staging

Exercises for the 2019 URP Python Programming and Data Analysis Course

20_nickels

20_qbbootcamp

Repository for the 2020 QB Bootcamp, CSHL School of Biological Sciences

21_nickels

Computational Scripts for Transcriptional Pausing

21_qbbootcamp

Repository for the 2021 QB Bootcamp at CSHL

22_drugs

22_drugs

22e_qbbootcamp

Materials for the 2022 QB Bootcamp at Cold Spring Harbor Laboratory

22e_urp

2021 URP Python course at CSHL