Lab files analysis .sh file

[jcasadogp]

Lab files analysis .sh file

[jcasadogp]

The problems come from the format that is asked:

First, it asks for technical replicate files which end with _n.txt, being n the number of technical replicate.
It is also related with how paths and file names are formed in the code. In lines such as:

These lines do not work if, instead of a directory, a single file is passed:
https://github.com/jcasadogp/bacterial_growth/blob/49c6309843c82d858494e0b2c66d5e1004c2653b/src/import_into_database/populate_db.py#L88-L89

From the previous lines we get the variable files_dir. Here, it passes files_diras an argument to the .sh file. It MUST be a directory; if not, the .sh will give errors.
https://github.com/jcasadogp/bacterial_growth/blob/49c6309843c82d858494e0b2c66d5e1004c2653b/src/import_into_database/populate_db.py#L145-L146