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auto_phylip

Programs to run PHYLIP based on sequences stored in TAB files

bcr-tcr-sequence-manipulation

Stuff related to sequence analysis

bmes546-matlab-jrs

The final matlab project for BMES546.

bmes680.20143-gill-weik-final-project

Code for a class bioinformatics project dealing with gene expression in the HBTRC samples in Alzheimer's

bus-data

Visualize and analyze data about bus travel times

bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

chronos

An ncurses stopwatch/timer.

cmd-colors-solarized

Solarized color settings for Windows command prompt

count-mutations

Return the mutation counts with certain biases from the germline to the mutants within clones in CLIP fasta files.

django-gitcms

A git based cms for django

dplyr

Dplyr: A grammar of data manipulation

eces690-jdag-jdg-final-project

This is the code used for our final project in ECES490/690.

eces690-tutorial05

This is a tutorial on methods for handling high throughput sequencing data.

editra

Editra

fasta2tab

Converts a FASTA file into a WNV tab file

freebayes

Bayesian haplotype-based polymorphism discovery and genotyping.

ggdendro

Tools to extract dendrogram plot data for use with ggplot

ggplot2

An implementation of the Grammar of Graphics in R

ggthemes

ggplot themes and scales

haskell-vim

Custom Haskell Vimscripts

haskell-vim-proto

Basic starter config for Vim and Haskell

homework-build

The purpose of this repo is as a jumping off point for a homeworks (or papers, etc.) that are written in LaTeX and use the SCons build system.

mahotas

Computer Vision in Python

matplotlib

md2multipart

Convert an e-mail composed in Markdown into a multipart/alternative attachment with HTML formatted by Pandoc

mdp-toolkit

MDP code

metron

analytics and metrics integration for Django

neco-ghc

A completion plugin for Haskell, using ghc-mod

nixpkgs

Nix Packages collection

nutrition-tools

Tools to manage macronutrient and other nutrition data and calculation