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2020-garri-correlation-script

agrank

Rank Aggregation in Phenotypic Selection

alphasimhlpr

Functions added to AlphaSimR to simplify simulating breeding schemes

bayesopt_breedscheme

Code to use BoTorch to optimize a breeding scheme simulated with BreedSimCost

bayesopt_bsc

Python Bayesian Optimization loop calling BreedSchemeCost to simulate the breeding scheme

bayesopt_prll

Parallelizing BoTorch optimization of a breeding scheme through crazy back and forth between Python and R

bayesopt_scriptsforms

bilinear

Fit bilinear models using AMMI or GGE and make 2D and 3D biplots

bo_budgets

Repository for analyses of BO budget optimizations

breedingschemelanguage

R/package "BreedingSchemeLanguage"

breedsimcost

Optimize a fixed breeding scheme on a budget using LOESS

breedsimcosttest

workflowr structure for testing cost optimization breeding simulation package

cassavasimulationmodels

This simulates conventional breeding scheme, broad and narrow adaptation breeding program

cbsd_trancriptomics

This repository contains scripts and additional information for the manuscript:

chinedozi

classical_analysis_gxe

Showing Moshood how this works

datafromt3usingbrapi

dssatfromr

flrcpointfinder

Analyze data from the FLRC challenge to see what courses to focus on next

garriquality

genomicmateselectr

Genomic Mate Selection

hexbin

Hexagonal binning routines and plotting methods

intercroppingoatpea

Code for randomizations of 2023 intercropping experiment then expanding to analyses

jeanlucj.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

lab1_7170

lab2_2021_7170

lab2_7170

lab3_7170

lab4_7170

leahexample