jefferislab Goto Github PK

2018lhsplitcode

Analysis code for 2018 split paper

2023_cva_taisz_galili

Public code for Taisz, Galili et al. (2023)

bftools

bridging_on-the-fly

bridgingregistrations

Bridging registrations to convert between different Drosophila template brains

cacheroostrovsky2010supplementaldata

Repository to manage supplemental data for Cachero, Ostrovsky et al. Sexual Dimorphism in the Fly Brain (Current Biology) http://dx.doi.org/10.1016/j.cub.2010.07.045

catnat

neuroanatomy toolbox – CATMAID extension functions

cross_species_examples

cross species examples for NBLAST paper originally based on nat.examples code

dpscanon

set of neurons (in dotprops format) required to build NBLAST figures

drosophilidbridgingregistrations

Bridging registrations to convert between different Drosophila species template brains

drosophiliddbm

R code for Deformation Based Morphometry across Drosophilid species

drvid

Access to DVID API

familynblast

NBLAST to identify neuron families and subfamilies

flybrainenv

Shared login scripts and other configuration info for the lmb linux cluster

flycircuitreg

flylight

utility code for registering/analysing flylight enhancer trap image data

flywatch

Code to analyse movies of flies – principally based on Yoshi Aso's (Janelia) behaviour rig

frucloneclustering

imagejmacros

General Jefferis Lab ImageJ macros – e.g. split lsms

jimpipeline

jlabvisuals

A repo for visual materials used in lab papers, presentations and posters

lhlibrary

A R Shiny app for sharing and viewing lateral horn data

lhn_tracings

lhns

A repository for neuron data related to the fly lateral horn

lhnsold

Skeleton data for neurons associated with the lateral horn of Drosophila melanogaster

makeaveragebrain

Make average template brains using CMTK’s avg_adm tool

matlabsupport

Commonly used 3rd party source code for Matlab - sometimes with some minor fixes

micromanagerstrobeplugin

A plugin developed for MicroManager / ImageJ to coordinate pulsed LED illumination with image acquisition

mirrorregistrations

Mirroring points in various Drosophila melanogaster template brain spaces

nblastwwwjb

Jekyll bootstrap version of nblast website